STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3YWT5_BRAFLC2H2-type domain-containing protein. (540 aa)    
Predicted Functional Partners:
C3Y5S4_BRAFL
Uncharacterized protein.
   
 
 0.965
C3Z8J1_BRAFL
TOG domain-containing protein.
   
    0.623
C3Y608_BRAFL
RRM domain-containing protein.
   
    0.586
C3YGH1_BRAFL
RRM domain-containing protein.
   
    0.586
C3ZFN1_BRAFL
Matrin-type domain-containing protein.
   
 
 0.526
C3XY08_BRAFL
Protein YIPF.
      
 0.465
C3YJA9_BRAFL
RRM domain-containing protein.
   
 
 0.460
C3ZTV9_BRAFL
CRAL-TRIO domain-containing protein.
      
 0.454
C3ZMC6_BRAFL
RRM domain-containing protein.
   
   0.448
C3ZBU4_BRAFL
Uncharacterized protein.
   
  
 0.439
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.