STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3YZW3_BRAFLWD repeat-containing protein 55; Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Belongs to the WD repeat WDR55 family. (438 aa)    
Predicted Functional Partners:
C3YS39_BRAFL
Uncharacterized protein.
 
      0.895
C3Z5L8_BRAFL
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 
0.769
C3XZ38_BRAFL
TPR_REGION domain-containing protein.
   
    0.636
C3XSF6_BRAFL
RRM domain-containing protein.
   
   0.573
C3ZVY1_BRAFL
Protein kinase domain-containing protein.
   
  
 0.560
C3ZVY2_BRAFL
Uncharacterized protein.
   
  
 0.560
C3XZK4_BRAFL
Uncharacterized protein.
   
    0.559
C3ZTK8_BRAFL
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
    0.536
C3YQL5_BRAFL
WD_REPEATS_REGION domain-containing protein.
   
  
 0.531
C3Y0U0_BRAFL
WD_REPEATS_REGION domain-containing protein.
   
  
 0.530
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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