STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3Z0K8_BRAFLUncharacterized protein. (492 aa)    
Predicted Functional Partners:
C3YS39_BRAFL
Uncharacterized protein.
   
 0.998
C3YKI6_BRAFL
MFAP1 domain-containing protein.
   
 0.978
C3YYY0_BRAFL
GRASP55_65 domain-containing protein.
 
 
  
 0.904
C3ZFR3_BRAFL
PRP38_assoc domain-containing protein.
   
 0.893
C3YIU9_BRAFL
Uncharacterized protein.
   
 
 0.880
C3ZQN8_BRAFL
Uncharacterized protein.
    
 0.865
LSM8
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
   0.864
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 
 0.855
C3XWC5_BRAFL
Uncharacterized protein.
    
 0.825
C3Y2Q2_BRAFL
Ubiquitin-like domain-containing protein.
    
 0.812
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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