C3Z2H5_BRAFL protein (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C3Z2H5_BRAFL

Uncharacterized protein. (291 aa)

Predicted Functional Partners:

C3ZKM2_BRAFL

0.659

C3XRZ1_BRAFL

0.587

C3Y2H5_BRAFL

0.575

C3XSM5_BRAFL

0.522

C3Z9A5_BRAFL

0.515

C3YCT1_BRAFL

0.511

C3YXB7_BRAFL

0.489

C3XXW5_BRAFL

0.474

C3XVY6_BRAFL

0.438

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRZ1_BRAFL	C3Z2H5_BRAFL	C3XRZ1	C3Z2H5	S1 motif domain-containing protein.	Uncharacterized protein.	0.587
C3XSM5_BRAFL	C3Z2H5_BRAFL	C3XSM5	C3Z2H5	PID domain-containing protein.	Uncharacterized protein.	0.522
C3XVY6_BRAFL	C3Z2H5_BRAFL	C3XVY6	C3Z2H5	Uncharacterized protein.	Uncharacterized protein.	0.438
C3XXW5_BRAFL	C3Z2H5_BRAFL	C3XXW5	C3Z2H5	PH domain-containing protein.	Uncharacterized protein.	0.474
C3XXW5_BRAFL	C3ZKM2_BRAFL	C3XXW5	C3ZKM2	PH domain-containing protein.	Uncharacterized protein.	0.457
C3Y2H5_BRAFL	C3YCT1_BRAFL	C3Y2H5	C3YCT1	Uncharacterized protein.	Uncharacterized protein.	0.529
C3Y2H5_BRAFL	C3Z2H5_BRAFL	C3Y2H5	C3Z2H5	Uncharacterized protein.	Uncharacterized protein.	0.575
C3Y2H5_BRAFL	C3Z9A5_BRAFL	C3Y2H5	C3Z9A5	Uncharacterized protein.	Uncharacterized protein.	0.530
C3YCT1_BRAFL	C3Y2H5_BRAFL	C3YCT1	C3Y2H5	Uncharacterized protein.	Uncharacterized protein.	0.529
C3YCT1_BRAFL	C3YXB7_BRAFL	C3YCT1	C3YXB7	Uncharacterized protein.	Protein-lysine N-methyltransferase BRAFLDRAFT_225067; S-adenosyl-L-methionine-dependent protein-lysine N- methyltransferase that methylates elongation factor 1-alpha. Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM5 family.	0.578
C3YCT1_BRAFL	C3Z2H5_BRAFL	C3YCT1	C3Z2H5	Uncharacterized protein.	Uncharacterized protein.	0.511
C3YCT1_BRAFL	C3Z9A5_BRAFL	C3YCT1	C3Z9A5	Uncharacterized protein.	Uncharacterized protein.	0.533
C3YXB7_BRAFL	C3YCT1_BRAFL	C3YXB7	C3YCT1	Protein-lysine N-methyltransferase BRAFLDRAFT_225067; S-adenosyl-L-methionine-dependent protein-lysine N- methyltransferase that methylates elongation factor 1-alpha. Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM5 family.	Uncharacterized protein.	0.578
C3YXB7_BRAFL	C3Z2H5_BRAFL	C3YXB7	C3Z2H5	Protein-lysine N-methyltransferase BRAFLDRAFT_225067; S-adenosyl-L-methionine-dependent protein-lysine N- methyltransferase that methylates elongation factor 1-alpha. Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM5 family.	Uncharacterized protein.	0.489
C3YXB7_BRAFL	C3Z9A5_BRAFL	C3YXB7	C3Z9A5	Protein-lysine N-methyltransferase BRAFLDRAFT_225067; S-adenosyl-L-methionine-dependent protein-lysine N- methyltransferase that methylates elongation factor 1-alpha. Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM5 family.	Uncharacterized protein.	0.536
C3Z2H5_BRAFL	C3XRZ1_BRAFL	C3Z2H5	C3XRZ1	Uncharacterized protein.	S1 motif domain-containing protein.	0.587
C3Z2H5_BRAFL	C3XSM5_BRAFL	C3Z2H5	C3XSM5	Uncharacterized protein.	PID domain-containing protein.	0.522
C3Z2H5_BRAFL	C3XVY6_BRAFL	C3Z2H5	C3XVY6	Uncharacterized protein.	Uncharacterized protein.	0.438
C3Z2H5_BRAFL	C3XXW5_BRAFL	C3Z2H5	C3XXW5	Uncharacterized protein.	PH domain-containing protein.	0.474
C3Z2H5_BRAFL	C3Y2H5_BRAFL	C3Z2H5	C3Y2H5	Uncharacterized protein.	Uncharacterized protein.	0.575