STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3Z3W2_BRAFLUncharacterized protein. (956 aa)    
Predicted Functional Partners:
C3YP57_BRAFL
Uncharacterized protein; Belongs to the SKP1 family.
    
 0.604
C3Z7L6_BRAFL
Nop domain-containing protein.
    
 0.549
C3XQV0_BRAFL
Small nuclear ribonucleoprotein Sm D3.
    
  0.548
C3Y0R4_BRAFL
Uncharacterized protein.
    
  0.548
C3Y952_BRAFL
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
    
  0.548
C3ZQN8_BRAFL
Uncharacterized protein.
    
  0.548
C3ZZW8_BRAFL
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
    
  0.548
C3XTF6_BRAFL
Small nuclear ribonucleoprotein Sm D2.
   
 
  0.547
C3YFH6_BRAFL
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
  0.547
LSM3
U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
     
  0.540
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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