STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3Z966_BRAFLEpimerase domain-containing protein. (1037 aa)    
Predicted Functional Partners:
C3Y0H7_BRAFL
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.865
C3YZV7_BRAFL
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.593
C3YC23_BRAFL
UDP-glucose 6-dehydrogenase; Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
 0.568
C3XRT4_BRAFL
RmlD_sub_bind domain-containing protein.
  
 
 0.564
C3XWH9_BRAFL
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
   
 0.548
C3Z8T3_BRAFL
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
  0.544
C3Y615_BRAFL
Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
   
 0.538
C3YX70_BRAFL
40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.
   
  0.532
C3Z5D0_BRAFL
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 0.518
C3Y261_BRAFL
Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.
  
  0.514
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.