STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3Z9H1_BRAFLUncharacterized protein. (463 aa)    
Predicted Functional Partners:
C3ZIW1_BRAFL
Uncharacterized protein.
   
 0.890
C3Z0I8_BRAFL
Uncharacterized protein.
   
 
 0.872
C3YL80_BRAFL
B30.2/SPRY domain-containing protein.
    
 0.586
C3Z2G5_BRAFL
WD_REPEATS_REGION domain-containing protein.
    
 0.571
C3YXD4_BRAFL
Uncharacterized protein.
    
 0.528
C3Y414_BRAFL
SET domain-containing protein.
      
 0.527
C3XQZ7_BRAFL
VEFS-Box domain-containing protein.
    
 0.512
C3Z3T7_BRAFL
Protein-histidine N-methyltransferase.
   
 
 0.499
C3YJY8_BRAFL
C3H1-type domain-containing protein.
    
 
 0.460
C3Z7Q6_BRAFL
C3H1-type domain-containing protein.
    
 
 0.460
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.