STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3ZH16_BRAFLUncharacterized protein. (473 aa)    
Predicted Functional Partners:
C3Z725_BRAFL
PPM-type phosphatase domain-containing protein.
   
 0.916
C3YPF5_BRAFL
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.906
C3Y6F9_BRAFL
TIR domain-containing protein.
   
 0.883
C3XXF8_BRAFL
Uncharacterized protein.
    
 0.804
C3Z7S7_BRAFL
ECSIT_Cterm domain-containing protein.
    
 0.730
C3YV23_BRAFL
Uncharacterized protein.
    
 0.726
C3Z8U0_BRAFL
Uncharacterized protein.
    
 0.723
C3ZGY7_BRAFL
Uncharacterized protein.
   
 0.660
C3ZP99_BRAFL
Death domain-containing protein.
   
 0.660
C3YJ46_BRAFL
Uncharacterized protein.
    
 0.659
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.