STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lhx3a|Lhx3bLIM class homeodomain transcription factor, Lhx3 subclass. (402 aa)    
Predicted Functional Partners:
C3Y242_BRAFL
LIM class homeodomain transcription factor, islet subclass.
   
0.957
C3YJ54_BRAFL
Uncharacterized protein.
    
 0.911
C3ZFN4_BRAFL
Uncharacterized protein.
    
 
 0.549
C3Z639_BRAFL
Homeobox protein.
   
  
0.548
C3XZB8_BRAFL
Homeobox domain-containing protein.
      
 0.537
C3ZH34_BRAFL
Motor neuron homeobox.
   
 
 0.535
C3XRX9_BRAFL
Uncharacterized protein.
    
 0.512
C3XWA6_BRAFL
Uncharacterized protein.
      
 0.501
C3YS20_BRAFL
POU domain protein.
   
 
 0.469
C3ZKE8_BRAFL
Paired box protein 6.
  
  
0.442
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.