C3ZJ45_BRAFL protein (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C3ZJ45_BRAFL

Uncharacterized protein. (394 aa)

Predicted Functional Partners:

C3YXK9_BRAFL

0.541

C3YT21_BRAFL

0.481

C3XZ88_BRAFL

0.441

C3XXX3_BRAFL

0.429

C3YDH5_BRAFL

0.429

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XXX3_BRAFL	C3ZJ45_BRAFL	C3XXX3	C3ZJ45	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.429
C3XZ88_BRAFL	C3YT21_BRAFL	C3XZ88	C3YT21	Uncharacterized protein.	PNPLA domain-containing protein.	0.441
C3XZ88_BRAFL	C3YXK9_BRAFL	C3XZ88	C3YXK9	Uncharacterized protein.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.834
C3XZ88_BRAFL	C3ZJ45_BRAFL	C3XZ88	C3ZJ45	Uncharacterized protein.	Uncharacterized protein.	0.441
C3YDH5_BRAFL	C3ZJ45_BRAFL	C3YDH5	C3ZJ45	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.429
C3YT21_BRAFL	C3XZ88_BRAFL	C3YT21	C3XZ88	PNPLA domain-containing protein.	Uncharacterized protein.	0.441
C3YT21_BRAFL	C3YXK9_BRAFL	C3YT21	C3YXK9	PNPLA domain-containing protein.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.541
C3YT21_BRAFL	C3ZJ45_BRAFL	C3YT21	C3ZJ45	PNPLA domain-containing protein.	Uncharacterized protein.	0.481
C3YXK9_BRAFL	C3XZ88_BRAFL	C3YXK9	C3XZ88	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	Uncharacterized protein.	0.834
C3YXK9_BRAFL	C3YT21_BRAFL	C3YXK9	C3YT21	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	PNPLA domain-containing protein.	0.541
C3YXK9_BRAFL	C3ZJ45_BRAFL	C3YXK9	C3ZJ45	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	Uncharacterized protein.	0.541
C3ZJ45_BRAFL	C3XXX3_BRAFL	C3ZJ45	C3XXX3	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.429
C3ZJ45_BRAFL	C3XZ88_BRAFL	C3ZJ45	C3XZ88	Uncharacterized protein.	Uncharacterized protein.	0.441
C3ZJ45_BRAFL	C3YDH5_BRAFL	C3ZJ45	C3YDH5	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.429
C3ZJ45_BRAFL	C3YT21_BRAFL	C3ZJ45	C3YT21	Uncharacterized protein.	PNPLA domain-containing protein.	0.481
C3ZJ45_BRAFL	C3YXK9_BRAFL	C3ZJ45	C3YXK9	Uncharacterized protein.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.541