STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3ZJY2_BRAFLAMP-binding domain-containing protein. (195 aa)    
Predicted Functional Partners:
C3Y6F0_BRAFL
Uncharacterized protein.
   
 0.867
C3YWF5_BRAFL
Uncharacterized protein.
 
 0.624
C3Z7D1_BRAFL
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.608
C3Y6A1_BRAFL
Carrier domain-containing protein.
  
 0.558
C3YIT6_BRAFL
Uncharacterized protein.
  
     0.524
C3YH80_BRAFL
AMP-binding domain-containing protein.
  
     0.510
MED15
Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.485
C3Z8K7_BRAFL
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.483
C3XX71_BRAFL
Uncharacterized protein.
  
 
 0.473
C3YGH0_BRAFL
Uncharacterized protein.
  
 0.457
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.