C3ZK58_BRAFL protein (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C3ZK58_BRAFL

AMP-binding_C domain-containing protein. (119 aa)

Predicted Functional Partners:

C3XX71_BRAFL

0.966

C3Z8K7_BRAFL

0.743

C3Y193_BRAFL

0.584

C3YGH0_BRAFL

0.568

C3YT22_BRAFL

0.568

C3YT24_BRAFL

0.568

C3ZV58_BRAFL

0.563

C3ZJH9_BRAFL

0.554

C3XVY9_BRAFL

0.551

RdhE

0.551

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XVY9_BRAFL	C3XX71_BRAFL	C3XVY9	C3XX71	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.849
C3XVY9_BRAFL	C3Y193_BRAFL	C3XVY9	C3Y193	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.920
C3XVY9_BRAFL	C3YGH0_BRAFL	C3XVY9	C3YGH0	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.852
C3XVY9_BRAFL	C3YT22_BRAFL	C3XVY9	C3YT22	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.852
C3XVY9_BRAFL	C3YT24_BRAFL	C3XVY9	C3YT24	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	SCP2 domain-containing protein.	0.852
C3XVY9_BRAFL	C3Z8K7_BRAFL	C3XVY9	C3Z8K7	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Citrate synthase; Belongs to the citrate synthase family.	0.963
C3XVY9_BRAFL	C3ZJH9_BRAFL	C3XVY9	C3ZJH9	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.916
C3XVY9_BRAFL	C3ZK58_BRAFL	C3XVY9	C3ZK58	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	AMP-binding_C domain-containing protein.	0.551
C3XVY9_BRAFL	C3ZV58_BRAFL	C3XVY9	C3ZV58	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.453
C3XX71_BRAFL	C3XVY9_BRAFL	C3XX71	C3XVY9	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.849
C3XX71_BRAFL	C3Y193_BRAFL	C3XX71	C3Y193	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.849
C3XX71_BRAFL	C3YGH0_BRAFL	C3XX71	C3YGH0	Uncharacterized protein.	Uncharacterized protein.	0.895
C3XX71_BRAFL	C3YT22_BRAFL	C3XX71	C3YT22	Uncharacterized protein.	Uncharacterized protein.	0.895
C3XX71_BRAFL	C3YT24_BRAFL	C3XX71	C3YT24	Uncharacterized protein.	SCP2 domain-containing protein.	0.895
C3XX71_BRAFL	C3Z8K7_BRAFL	C3XX71	C3Z8K7	Uncharacterized protein.	Citrate synthase; Belongs to the citrate synthase family.	0.999
C3XX71_BRAFL	C3ZJH9_BRAFL	C3XX71	C3ZJH9	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.849
C3XX71_BRAFL	C3ZK58_BRAFL	C3XX71	C3ZK58	Uncharacterized protein.	AMP-binding_C domain-containing protein.	0.966
C3XX71_BRAFL	C3ZV58_BRAFL	C3XX71	C3ZV58	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.762
C3XX71_BRAFL	RdhE	C3XX71	C3YIA3	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.849
C3Y193_BRAFL	C3XVY9_BRAFL	C3Y193	C3XVY9	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.920