STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3ZKL7_BRAFLBTB domain-containing protein; Belongs to the potassium channel family. (377 aa)    
Predicted Functional Partners:
C3Y0H7_BRAFL
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.921
C3YV61_BRAFL
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.651
C3Z4W3_BRAFL
Uncharacterized protein.
   
 0.651
C3YD43_BRAFL
Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
   
 0.650
C3XWI0_BRAFL
Uncharacterized protein.
   
 0.648
C3ZFA2_BRAFL
Uncharacterized protein.
   
 0.648
C3YMT6_BRAFL
Ribosomal_L7Ae domain-containing protein.
   
 0.644
C3ZYP1_BRAFL
TRASH domain-containing protein.
   
 0.643
C3ZH11_BRAFL
Uncharacterized protein.
  
 0.642
C3ZQP8_BRAFL
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
  
 0.633
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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