STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3ZM49_BRAFLUncharacterized protein. (284 aa)    
Predicted Functional Partners:
C3ZI23_BRAFL
Uncharacterized protein.
   
    0.808
C3ZEC4_BRAFL
Uncharacterized protein.
   
  
 0.730
C3Z9C7_BRAFL
Uncharacterized protein.
   
  
 0.688
C3YQC0_BRAFL
Uncharacterized protein.
   
    0.659
C3XSF6_BRAFL
RRM domain-containing protein.
   
    0.656
C3Y0W9_BRAFL
Uncharacterized protein.
   
    0.648
C3Y0A5_BRAFL
NUC153 domain-containing protein.
   
    0.636
C3Y230_BRAFL
NUC153 domain-containing protein.
   
  
 0.620
C3YVW0_BRAFL
Sas10 domain-containing protein.
   
    0.599
C3YZV9_BRAFL
WD_REPEATS_REGION domain-containing protein.
   
   0.548
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.