STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3ZSP6_BRAFLCollagen IV NC1 domain-containing protein. (438 aa)    
Predicted Functional Partners:
C3ZGV8_BRAFL
Uncharacterized protein.
  
     0.535
C3Z8U4_BRAFL
Uncharacterized protein.
  
     0.533
C3Z6Q2_BRAFL
C1q domain-containing protein.
  
     0.524
C3ZRM0_BRAFL
C1q domain-containing protein.
  
     0.502
C3Y834_BRAFL
Uncharacterized protein.
  
     0.499
C3Z6Q4_BRAFL
C1q domain-containing protein.
  
     0.474
C3Z7K8_BRAFL
C1q domain-containing protein.
  
     0.471
C3ZAP7_BRAFL
Uncharacterized protein.
  
     0.465
C3Y9V7_BRAFL
C1q domain-containing protein.
  
     0.460
C3Z7K5_BRAFL
C1q domain-containing protein.
  
     0.427
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.