STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3ZSQ6_BRAFLRIO domain-containing protein. (470 aa)    
Predicted Functional Partners:
C3ZI23_BRAFL
Uncharacterized protein.
   
 0.954
C3YFD1_BRAFL
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
 0.951
C3Z6A1_BRAFL
RIO domain-containing protein.
   
 
0.933
C3Z2R5_BRAFL
Bms1-type G domain-containing protein.
   
 0.927
C3Y0H7_BRAFL
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.901
C3ZEC4_BRAFL
Uncharacterized protein.
   
 0.898
C3Y683_BRAFL
GRIP domain-containing protein.
   
 0.783
C3Z889_BRAFL
Nucleic_acid_bd domain-containing protein.
   
 0.783
C3XWH9_BRAFL
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
   
 0.780
C3ZLT4_BRAFL
Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
  
  
0.750
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.