STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3ZXZ2_BRAFLPUA domain-containing protein. (181 aa)    
Predicted Functional Partners:
C3ZT88_BRAFL
SUI1 domain-containing protein.
   
 
 0.977
C3Y0H7_BRAFL
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 
 0.896
C3YZV7_BRAFL
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
    
   0.616
C3XWH9_BRAFL
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
    
   0.614
C3YJC4_BRAFL
S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.
   
 
 0.562
C3YCE6_BRAFL
S4 RNA-binding domain-containing protein.
   
 
 0.544
C3YVL3_BRAFL
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
 
 
    0.541
C3Y615_BRAFL
Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
   
   0.514
C3XSR9_BRAFL
Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.
      
 0.504
C3Z7G2_BRAFL
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
   
 
 0.494
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.