STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3ZZ02_BRAFLUncharacterized protein. (98 aa)    
Predicted Functional Partners:
C3Y4B4_BRAFL
Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.
   
 0.708
C3Y1B9_BRAFL
zf-RING-like domain-containing protein.
    
 0.701
C3Y1S5_BRAFL
SMC_N domain-containing protein.
   
 0.696
C3ZS00_BRAFL
SMC_N domain-containing protein.
   
 0.694
C3YMQ0_BRAFL
SP-RING-type domain-containing protein.
    
 0.693
C3Z465_BRAFL
Uncharacterized protein.
   
 0.511
C3YK10_BRAFL
SMC hinge domain-containing protein.
    
 0.488
C3YT48_BRAFL
Structural maintenance of chromosomes protein.
    
 0.488
C3Y0D6_BRAFL
Uncharacterized protein.
    
 0.440
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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