STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3ZZA5_BRAFLUncharacterized protein. (883 aa)    
Predicted Functional Partners:
C3YEP9_BRAFL
Uncharacterized protein.
    
 
 0.591
C3YD07_BRAFL
2-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.
      
 0.538
C3YS96_BRAFL
LisH domain-containing protein.
    
 
 0.531
C3Z4C5_BRAFL
SpoU_sub_bind domain-containing protein.
      
 0.519
C3ZH04_BRAFL
Uncharacterized protein.
      
 0.482
C3XWD2_BRAFL
PCM1_C domain-containing protein.
    
 
 0.426
C3Z446_BRAFL
PPM-type phosphatase domain-containing protein.
      
 0.424
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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