STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C4A078_BRAFLUncharacterized protein. (155 aa)    
Predicted Functional Partners:
C3ZGP5_BRAFL
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.
   
 
 0.680
C3Z3Y3_BRAFL
Mevalonate kinase.
   
 
 0.677
C3Z399_BRAFL
Nudix hydrolase domain-containing protein.
   
 
 0.624
C3YNT0_BRAFL
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
   
 
 0.568
C3YBZ7_BRAFL
Uncharacterized protein.
   
  
 0.507
C3ZJ14_BRAFL
3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.
   
  
 0.476
C3YBI5_BRAFL
3-hydroxy-3-methylglutaryl coenzyme A reductase.
      
 0.443
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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