STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C4A0K2_BRAFLUncharacterized protein. (150 aa)    
Predicted Functional Partners:
C3Y7Y5_BRAFL
Uncharacterized protein.
   
 0.915
C3ZGV4_BRAFL
HMG box domain-containing protein.
   
 0.899
C3ZLP4_BRAFL
Uncharacterized protein; Belongs to the actin family.
    
 0.883
C3ZM58_BRAFL
BAF250_C domain-containing protein.
   
 0.814
C3ZR38_BRAFL
SWIB domain-containing protein.
   
 0.731
C3ZX68_BRAFL
SWIB domain-containing protein.
   
 0.731
C3ZXR0_BRAFL
RFX-type winged-helix domain-containing protein.
   
 0.702
C3YH08_BRAFL
PHD-type domain-containing protein.
   
 
 0.690
C3Y0R9_BRAFL
RBB1NT domain-containing protein.
   
 
 0.618
MYSM1
Histone H2A deubiquitinase MYSM1; Metalloprotease that specifically deubiquitinates monoubiquitinated histone H2A, a specific tag for epigenetic transcriptional repression, thereby acting as a coactivator. Preferentially deubiquitinates monoubiquitinated H2A in hyperacetylated nucleosomes. Deubiquitination of histone H2A leads to facilitate the phosphorylation and dissociation of histone H1 from the nucleosome. Acts as a coactivator by participating in the initiation and elongation steps of androgen receptor (AR)-induced gene activation (By similarity).
   
 0.599
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.