Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
S4R4B1_PETMAIFRD domain-containing protein. (183 aa)    
Predicted Functional Partners:
S4RMF7_PETMA
UBX domain protein 7.
     
  0.891
COMMD10
COMM domain containing 10.
   
 0.886
S4R6Q1_PETMA
Copper metabolism (Murr1) domain containing 1.
    
 0.837
S4RZQ2_PETMA
COMM domain containing 9.
   
 0.795
S4R588_PETMA
KOG2701 domain-containing protein.
    
 
 0.741
S4RCJ6_PETMA
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.668
S4R5S2_PETMA
Zinc finger, ZZ-type containing 3.
    
 0.656
S4R8N9_PETMA
DnaJ (Hsp40) homolog, subfamily C, member 1.
    
 0.656
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
    
  0.634
S4RWB9_PETMA
Oxysterol-binding protein; Belongs to the OSBP family.
      
 0.610
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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