Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R4B3_PETMAPPM-type phosphatase domain-containing protein. (312 aa)    
Predicted Functional Partners:
S4R7S6_PETMA
RAB35, member RAS oncogene family b.
    
 
 0.740
RAB29
RAB29, member RAS oncogene family.
    
 
 0.677
S4RMZ0_PETMA
Uncharacterized protein.
    
 
 0.677
RILPL1
Rab interacting lysosomal protein like 1.
      
 0.665
S4R4P9_PETMA
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
      
 0.603
S4R5T5_PETMA
Myotubularin related protein 9.
      
 0.582
S4R5C5_PETMA
Uncharacterized protein.
    
 
 0.568
S4R948_PETMA
Tyrosyl-DNA phosphodiesterase 2b.
      
 0.523
S4RWF4_PETMA
Uncharacterized protein.
      
 0.461
S4RXT5_PETMA
Polynucleotide kinase 3'-phosphatase.
      
 0.450
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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