S4R4B9_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R4B9_PETMA

Nuclear receptor subfamily 2, group F, member 1b. (330 aa)

Predicted Functional Partners:

S4RS26_PETMA

0.848

S4R8J4_PETMA

0.837

S4RIU1_PETMA

0.828

WWTR1

0.730

FABP3

0.717

S4RBH6_PETMA

0.717

FABP3-2

0.717

POLR2B

0.705

S4RTJ4_PETMA

0.705

TOMM40L

0.683

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FABP3	FABP3-2	ENSPMAP00000000902	ENSPMAP00000008513	Fatty acid binding protein 3, muscle and heart; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	Fatty acid binding protein 3, muscle and heart; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	0.902
FABP3	S4R4B9_PETMA	ENSPMAP00000000902	ENSPMAP00000000048	Fatty acid binding protein 3, muscle and heart; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	Nuclear receptor subfamily 2, group F, member 1b.	0.717
FABP3	S4RBH6_PETMA	ENSPMAP00000000902	ENSPMAP00000002557	Fatty acid binding protein 3, muscle and heart; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	Fatty acid binding protein 7, brain, a; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	0.904
FABP3-2	FABP3	ENSPMAP00000008513	ENSPMAP00000000902	Fatty acid binding protein 3, muscle and heart; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	Fatty acid binding protein 3, muscle and heart; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	0.902
FABP3-2	S4R4B9_PETMA	ENSPMAP00000008513	ENSPMAP00000000048	Fatty acid binding protein 3, muscle and heart; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	Nuclear receptor subfamily 2, group F, member 1b.	0.717
FABP3-2	S4RBH6_PETMA	ENSPMAP00000008513	ENSPMAP00000002557	Fatty acid binding protein 3, muscle and heart; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	Fatty acid binding protein 7, brain, a; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	0.904
POLR2B	S4R4B9_PETMA	ENSPMAP00000001304	ENSPMAP00000000048	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Nuclear receptor subfamily 2, group F, member 1b.	0.705
POLR2B	S4R8J4_PETMA	ENSPMAP00000001304	ENSPMAP00000001525	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	COP9 signalosome subunit 2.	0.622
POLR2B	S4RS26_PETMA	ENSPMAP00000001304	ENSPMAP00000008015	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.751
POLR2B	S4RTJ4_PETMA	ENSPMAP00000001304	ENSPMAP00000008534	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.900
S4R4B9_PETMA	FABP3	ENSPMAP00000000048	ENSPMAP00000000902	Nuclear receptor subfamily 2, group F, member 1b.	Fatty acid binding protein 3, muscle and heart; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	0.717
S4R4B9_PETMA	FABP3-2	ENSPMAP00000000048	ENSPMAP00000008513	Nuclear receptor subfamily 2, group F, member 1b.	Fatty acid binding protein 3, muscle and heart; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	0.717
S4R4B9_PETMA	POLR2B	ENSPMAP00000000048	ENSPMAP00000001304	Nuclear receptor subfamily 2, group F, member 1b.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.705
S4R4B9_PETMA	S4R8J4_PETMA	ENSPMAP00000000048	ENSPMAP00000001525	Nuclear receptor subfamily 2, group F, member 1b.	COP9 signalosome subunit 2.	0.837
S4R4B9_PETMA	S4RBH6_PETMA	ENSPMAP00000000048	ENSPMAP00000002557	Nuclear receptor subfamily 2, group F, member 1b.	Fatty acid binding protein 7, brain, a; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	0.717
S4R4B9_PETMA	S4RIU1_PETMA	ENSPMAP00000000048	ENSPMAP00000005123	Nuclear receptor subfamily 2, group F, member 1b.	Uncharacterized protein.	0.828
S4R4B9_PETMA	S4RS26_PETMA	ENSPMAP00000000048	ENSPMAP00000008015	Nuclear receptor subfamily 2, group F, member 1b.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.848
S4R4B9_PETMA	S4RTJ4_PETMA	ENSPMAP00000000048	ENSPMAP00000008534	Nuclear receptor subfamily 2, group F, member 1b.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.705
S4R4B9_PETMA	TOMM40L	ENSPMAP00000000048	ENSPMAP00000004009	Nuclear receptor subfamily 2, group F, member 1b.	Translocase of outer mitochondrial membrane 40 homolog (yeast).	0.683
S4R4B9_PETMA	WWTR1	ENSPMAP00000000048	ENSPMAP00000003550	Nuclear receptor subfamily 2, group F, member 1b.	WW domain containing transcription regulator 1.	0.730