Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
S4R4C4_PETMAGamma-synuclein; Belongs to the synuclein family. (123 aa)    
Predicted Functional Partners:
S4RTF1_PETMA
V-SNARE coiled-coil homology domain-containing protein.
   
 
 0.874
S4R7Q0_PETMA
Parkinson protein 7.
    
 
 0.850
S4R9G1_PETMA
E3 ubiquitin-protein ligase; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
    
 0.841
S4REM4_PETMA
Sequestosome 1.
    
 
 0.809
S4RCG5_PETMA
STIP1 homology and U-Box containing protein 1.
    
 
 0.763
S4RTC7_PETMA
Uncharacterized protein.
    
 0.728
LAMP5
Lysosomal associated membrane protein family member 5.
   
 
 0.702
S4REL5_PETMA
Uncharacterized protein.
    
 
 0.700
S4RRR2_PETMA
Uncharacterized protein.
    
 0.698
S4RB93_PETMA
Solute carrier family 17 member 6b.
    
 
 0.690
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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