S4R4D4_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R4D4_PETMA

Uncharacterized protein; Belongs to the cytochrome P450 family. (287 aa)

Predicted Functional Partners:

S4S166_PETMA

0.949

S4RBR6_PETMA

0.935

S4RW13_PETMA

0.928

UGT1A1

0.924

S4RJ32_PETMA

0.924

S4RU50_PETMA

0.924

S4RUT3_PETMA

0.924

UGT1A1-2

0.924

S4RSZ9_PETMA

0.916

S4RKP6_PETMA

0.908

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S4R4D4_PETMA	S4RBR6_PETMA	ENSPMAP00000000063	ENSPMAP00000002647	Uncharacterized protein; Belongs to the cytochrome P450 family.	Aldedh domain-containing protein.	0.935
S4R4D4_PETMA	S4RJ32_PETMA	ENSPMAP00000000063	ENSPMAP00000005214	Uncharacterized protein; Belongs to the cytochrome P450 family.	Cytochrome P450, family 26, subfamily b, polypeptide 1; Belongs to the cytochrome P450 family.	0.924
S4R4D4_PETMA	S4RKP6_PETMA	ENSPMAP00000000063	ENSPMAP00000005779	Uncharacterized protein; Belongs to the cytochrome P450 family.	Sulfotransferase; Belongs to the sulfotransferase 1 family.	0.908
S4R4D4_PETMA	S4RSZ9_PETMA	ENSPMAP00000000063	ENSPMAP00000008339	Uncharacterized protein; Belongs to the cytochrome P450 family.	Hydroxysteroid (17-beta) dehydrogenase 7.	0.916
S4R4D4_PETMA	S4RU50_PETMA	ENSPMAP00000000063	ENSPMAP00000008740	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.924
S4R4D4_PETMA	S4RUT3_PETMA	ENSPMAP00000000063	ENSPMAP00000008973	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.924
S4R4D4_PETMA	S4RW13_PETMA	ENSPMAP00000000063	ENSPMAP00000009403	Uncharacterized protein; Belongs to the cytochrome P450 family.	Hydroxysteroid (17-beta) dehydrogenase 12b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.928
S4R4D4_PETMA	S4S166_PETMA	ENSPMAP00000000063	ENSPMAP00000011208	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.949
S4R4D4_PETMA	UGT1A1	ENSPMAP00000000063	ENSPMAP00000003659	Uncharacterized protein; Belongs to the cytochrome P450 family.	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family.	0.924
S4R4D4_PETMA	UGT1A1-2	ENSPMAP00000000063	ENSPMAP00000010274	Uncharacterized protein; Belongs to the cytochrome P450 family.	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family.	0.924
S4RBR6_PETMA	S4R4D4_PETMA	ENSPMAP00000002647	ENSPMAP00000000063	Aldedh domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.935
S4RBR6_PETMA	S4RJ32_PETMA	ENSPMAP00000002647	ENSPMAP00000005214	Aldedh domain-containing protein.	Cytochrome P450, family 26, subfamily b, polypeptide 1; Belongs to the cytochrome P450 family.	0.969
S4RBR6_PETMA	S4RU50_PETMA	ENSPMAP00000002647	ENSPMAP00000008740	Aldedh domain-containing protein.	Uncharacterized protein.	0.917
S4RBR6_PETMA	S4RUT3_PETMA	ENSPMAP00000002647	ENSPMAP00000008973	Aldedh domain-containing protein.	Uncharacterized protein.	0.917
S4RBR6_PETMA	UGT1A1	ENSPMAP00000002647	ENSPMAP00000003659	Aldedh domain-containing protein.	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family.	0.917
S4RBR6_PETMA	UGT1A1-2	ENSPMAP00000002647	ENSPMAP00000010274	Aldedh domain-containing protein.	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family.	0.917
S4RJ32_PETMA	S4R4D4_PETMA	ENSPMAP00000005214	ENSPMAP00000000063	Cytochrome P450, family 26, subfamily b, polypeptide 1; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.924
S4RJ32_PETMA	S4RBR6_PETMA	ENSPMAP00000005214	ENSPMAP00000002647	Cytochrome P450, family 26, subfamily b, polypeptide 1; Belongs to the cytochrome P450 family.	Aldedh domain-containing protein.	0.969
S4RJ32_PETMA	S4RSZ9_PETMA	ENSPMAP00000005214	ENSPMAP00000008339	Cytochrome P450, family 26, subfamily b, polypeptide 1; Belongs to the cytochrome P450 family.	Hydroxysteroid (17-beta) dehydrogenase 7.	0.505
S4RJ32_PETMA	S4RU50_PETMA	ENSPMAP00000005214	ENSPMAP00000008740	Cytochrome P450, family 26, subfamily b, polypeptide 1; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.915