Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R4E4_PETMAUncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (440 aa)    
Predicted Functional Partners:
S4R993_PETMA
Gamma-aminobutyric acid (GABA) A receptor, alpha 6a; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
 0.672
S4RBW2_PETMA
Gamma-aminobutyric acid (GABA) A receptor, gamma 2; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
 0.672
S4RDC4_PETMA
Uncharacterized protein.
   
 0.672
S4RSS5_PETMA
Neur_chan_LBD domain-containing protein.
   
 0.672
S4RAE7_PETMA
Uncharacterized protein.
      
 0.650
S4RDI2_PETMA
Transcription factor AP-2 epsilon.
      
 0.458
S4S0E6_PETMA
Uncharacterized protein.
      
 0.458
S4R4E5_PETMA
TNF receptor-associated factor.
      
 0.453
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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