Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R4E5_PETMATNF receptor-associated factor. (477 aa)    
Predicted Functional Partners:
S4RRH7_PETMA
Protein kinase domain-containing protein.
    
 0.998
TRADD
Tnfrsf1a-associated via death domain.
    
 0.993
S4RFF2_PETMA
Inhibitor of nuclear factor kappa B kinase subunit epsilon.
   
 0.983
S4RMR7_PETMA
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.975
S4R6J6_PETMA
MYD88 innate immune signal transduction adaptor.
    
 0.970
S4RS66_PETMA
TNF receptor-associated factor.
    
 0.955
S4RA88_PETMA
TNF receptor-associated factor.
  
 
0.954
S4RNK6_PETMA
Ubiquitin thioesterase.
    
 0.951
S4RVE2_PETMA
Uncharacterized protein.
    
  0.949
S4RCZ8_PETMA
Baculoviral IAP repeat containing 2.
   
 0.942
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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