Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R4G8_PETMARab geranylgeranyltransferase subunit beta. (138 aa)    
Predicted Functional Partners:
S4RQG7_PETMA
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.997
S4RE83_PETMA
Protein tyrosine phosphatase 4A1.
    
  0.996
S4R9V8_PETMA
ZRAB1B, member RAS oncogene family a.
    
 0.981
S4RRZ3_PETMA
RAB33B, member RAS oncogene family a.
    
 0.952
S4R9P7_PETMA
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
    
 
 0.944
ARMC5
Armadillo repeat containing 5.
    
 0.851
S4RGJ1_PETMA
PiggyBac transposable element derived 5.
    
   0.825
S4RFJ1_PETMA
Protein tyrosine phosphatase 4A3a.
    
 0.812
S4RQH4_PETMA
Phosphatidylinositol-4-phosphate 5-kinase, type I, alpha, b.
    
   0.809
S4RWQ4_PETMA
RAB3C, member RAS oncogene family.
    
 0.789
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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