ENSPMAP00000000253 protein (Petromyzon marinus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPMAP00000000253

annotation not available (284 aa)

Predicted Functional Partners:

S4RR07_PETMA

0.947

S4RJB6_PETMA

0.904

S4RJW7_PETMA

0.904

S4RV21_PETMA

0.903

S4RK02_PETMA

0.861

S4RLW1_PETMA

0.861

S4RLA2_PETMA

0.856

S4RLK7_PETMA

0.849

POLR2B

0.848

S4RTJ4_PETMA

0.848

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMAP00000000253	POLR2B	ENSPMAP00000000253	ENSPMAP00000001304	annotation not available	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.848
ENSPMAP00000000253	S4RJB6_PETMA	ENSPMAP00000000253	ENSPMAP00000005298	annotation not available	Polymerase (RNA) II (DNA directed) polypeptide C.	0.904
ENSPMAP00000000253	S4RJW7_PETMA	ENSPMAP00000000253	ENSPMAP00000005500	annotation not available	RPOL4c domain-containing protein.	0.904
ENSPMAP00000000253	S4RK02_PETMA	ENSPMAP00000000253	ENSPMAP00000005535	annotation not available	Uncharacterized protein.	0.861
ENSPMAP00000000253	S4RLA2_PETMA	ENSPMAP00000000253	ENSPMAP00000005988	annotation not available	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.856
ENSPMAP00000000253	S4RLK7_PETMA	ENSPMAP00000000253	ENSPMAP00000006093	annotation not available	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.849
ENSPMAP00000000253	S4RLW1_PETMA	ENSPMAP00000000253	ENSPMAP00000006197	annotation not available	Ig-like domain-containing protein.	0.861
ENSPMAP00000000253	S4RR07_PETMA	ENSPMAP00000000253	ENSPMAP00000007643	annotation not available	Uncharacterized protein.	0.947
ENSPMAP00000000253	S4RTJ4_PETMA	ENSPMAP00000000253	ENSPMAP00000008534	annotation not available	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.848
ENSPMAP00000000253	S4RV21_PETMA	ENSPMAP00000000253	ENSPMAP00000009061	annotation not available	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.903
POLR2B	ENSPMAP00000000253	ENSPMAP00000001304	ENSPMAP00000000253	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	annotation not available	0.848
POLR2B	S4RJB6_PETMA	ENSPMAP00000001304	ENSPMAP00000005298	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.998
POLR2B	S4RJW7_PETMA	ENSPMAP00000001304	ENSPMAP00000005500	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOL4c domain-containing protein.	0.990
POLR2B	S4RLA2_PETMA	ENSPMAP00000001304	ENSPMAP00000005988	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.913
POLR2B	S4RLK7_PETMA	ENSPMAP00000001304	ENSPMAP00000006093	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.983
POLR2B	S4RR07_PETMA	ENSPMAP00000001304	ENSPMAP00000007643	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.993
POLR2B	S4RV21_PETMA	ENSPMAP00000001304	ENSPMAP00000009061	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.990
S4RJB6_PETMA	ENSPMAP00000000253	ENSPMAP00000005298	ENSPMAP00000000253	Polymerase (RNA) II (DNA directed) polypeptide C.	annotation not available	0.904
S4RJB6_PETMA	POLR2B	ENSPMAP00000005298	ENSPMAP00000001304	Polymerase (RNA) II (DNA directed) polypeptide C.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
S4RJB6_PETMA	S4RJW7_PETMA	ENSPMAP00000005298	ENSPMAP00000005500	Polymerase (RNA) II (DNA directed) polypeptide C.	RPOL4c domain-containing protein.	0.999