STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R540_PETMAUncharacterized protein. (541 aa)    
Predicted Functional Partners:
S4RTS1_PETMA
Uncharacterized protein.
 
     0.943
S4RJ77_PETMA
Uncharacterized protein.
 
     0.922
S4RHM2_PETMA
Uncharacterized protein.
 
   
 0.904
S4RS14_PETMA
Uncharacterized protein.
 
      0.894
S4RBV7_PETMA
Sphingomyelin phosphodiesterase 2b, neutral membrane (neutral sphingomyelinase).
     
 0.689
S4R9X0_PETMA
Rabenosyn, RAB effector.
     
 0.662
S4RHQ9_PETMA
Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.
   
 
  0.646
S4REM4_PETMA
Sequestosome 1.
   
 
 0.634
S4RGH2_PETMA
GABA(A) receptor-associated protein like 2.
    
 
 0.593
S4RBB3_PETMA
Receptor for activated C kinase 1.
    
 0.580
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.