STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R6I8_PETMARRM domain-containing protein. (179 aa)    
Predicted Functional Partners:
S4RG40_PETMA
XPA binding protein 2.
   
 0.999
S4RB87_PETMA
Crooked neck pre-mRNA splicing factor 1.
   
 0.994
S4REH6_PETMA
Aquarius intron-binding spliceosomal factor.
    
 0.994
S4RTX3_PETMA
Uncharacterized protein.
   
 0.993
S4RS76_PETMA
RNA binding motif protein 22.
   
 0.992
S4RJW2_PETMA
Uncharacterized protein.
   
  0.990
ZNF830
U1-type domain-containing protein.
    
 0.974
AQR
Aquarius intron-binding spliceosomal factor.
    
 0.968
S4RRS3_PETMA
CWF19 like cell cycle control factor 2.
    
  0.958
S4RNE7_PETMA
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
 
  
 
 0.948
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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