S4R6L6_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

S4R6L6_PETMA

Uncharacterized protein. (231 aa)

Predicted Functional Partners:

S4RHV8_PETMA

0.930

S4RL44_PETMA

0.919

S4RL40_PETMA

0.916

S4RX27_PETMA

0.914

S4RSP8_PETMA

0.913

S4RMU7_PETMA

0.906

S4RYT8_PETMA

0.899

S4RN75_PETMA

0.825

S4RXU4_PETMA

0.825

S4R639_PETMA

0.805

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S4R639_PETMA	S4R6L6_PETMA	ENSPMAP00000000669	ENSPMAP00000000846	RAB3A interacting protein (rabin3).	Uncharacterized protein.	0.805
S4R639_PETMA	S4RHV8_PETMA	ENSPMAP00000000669	ENSPMAP00000004790	RAB3A interacting protein (rabin3).	Exocyst complex component 6B.	0.805
S4R639_PETMA	S4RL40_PETMA	ENSPMAP00000000669	ENSPMAP00000005926	RAB3A interacting protein (rabin3).	Exocyst complex component 5.	0.888
S4R639_PETMA	S4RL44_PETMA	ENSPMAP00000000669	ENSPMAP00000005930	RAB3A interacting protein (rabin3).	Uncharacterized protein.	0.805
S4R639_PETMA	S4RMU7_PETMA	ENSPMAP00000000669	ENSPMAP00000006533	RAB3A interacting protein (rabin3).	Exocyst complex component 3.	0.847
S4R639_PETMA	S4RN75_PETMA	ENSPMAP00000000669	ENSPMAP00000006661	RAB3A interacting protein (rabin3).	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.760
S4R639_PETMA	S4RSP8_PETMA	ENSPMAP00000000669	ENSPMAP00000008238	RAB3A interacting protein (rabin3).	Exocyst complex component 8.	0.823
S4R639_PETMA	S4RX27_PETMA	ENSPMAP00000000669	ENSPMAP00000009767	RAB3A interacting protein (rabin3).	Exocyst complex component 4.	0.858
S4R639_PETMA	S4RXU4_PETMA	ENSPMAP00000000669	ENSPMAP00000010035	RAB3A interacting protein (rabin3).	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.760
S4R639_PETMA	S4RYT8_PETMA	ENSPMAP00000000669	ENSPMAP00000010379	RAB3A interacting protein (rabin3).	Exocyst complex component 6B.	0.805
S4R6L6_PETMA	S4R639_PETMA	ENSPMAP00000000846	ENSPMAP00000000669	Uncharacterized protein.	RAB3A interacting protein (rabin3).	0.805
S4R6L6_PETMA	S4RHV8_PETMA	ENSPMAP00000000846	ENSPMAP00000004790	Uncharacterized protein.	Exocyst complex component 6B.	0.930
S4R6L6_PETMA	S4RL40_PETMA	ENSPMAP00000000846	ENSPMAP00000005926	Uncharacterized protein.	Exocyst complex component 5.	0.916
S4R6L6_PETMA	S4RL44_PETMA	ENSPMAP00000000846	ENSPMAP00000005930	Uncharacterized protein.	Uncharacterized protein.	0.919
S4R6L6_PETMA	S4RMU7_PETMA	ENSPMAP00000000846	ENSPMAP00000006533	Uncharacterized protein.	Exocyst complex component 3.	0.906
S4R6L6_PETMA	S4RN75_PETMA	ENSPMAP00000000846	ENSPMAP00000006661	Uncharacterized protein.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.825
S4R6L6_PETMA	S4RSP8_PETMA	ENSPMAP00000000846	ENSPMAP00000008238	Uncharacterized protein.	Exocyst complex component 8.	0.913
S4R6L6_PETMA	S4RX27_PETMA	ENSPMAP00000000846	ENSPMAP00000009767	Uncharacterized protein.	Exocyst complex component 4.	0.914
S4R6L6_PETMA	S4RXU4_PETMA	ENSPMAP00000000846	ENSPMAP00000010035	Uncharacterized protein.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.825
S4R6L6_PETMA	S4RYT8_PETMA	ENSPMAP00000000846	ENSPMAP00000010379	Uncharacterized protein.	Exocyst complex component 6B.	0.899