Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R723_PETMATSP C-terminal domain-containing protein. (199 aa)    
Predicted Functional Partners:
S4RSM3_PETMA
Integrin beta; Belongs to the integrin beta chain family.
    
 0.960
S4RYH5_PETMA
LAM_G_DOMAIN domain-containing protein.
 
 
  0.949
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.942
ITGB1-2
Integrin beta; Belongs to the integrin beta chain family.
    
 0.942
S4RS57_PETMA
Integrin beta.
    
 0.942
S4RYC6_PETMA
Uncharacterized protein.
 
     0.915
S4RBS0_PETMA
CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.
    
 0.909
S4R4E3_PETMA
Uncharacterized protein.
 
  
   0.877
S4RJM7_PETMA
Uncharacterized protein.
    
  0.793
S4RQI6_PETMA
Integrin, alpha 8; Belongs to the integrin alpha chain family.
    
  0.793
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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