Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
S4R726_PETMAGTP binding protein 3, mitochondrial. (225 aa)    
Predicted Functional Partners:
MTO1
Mitochondrial tRNA translation optimization 1.
 
 0.993
S4R6T7_PETMA
ERGIC and golgi 3.
  
 0.961
S4RA97_PETMA
Si:ch211-225b10.3.
  
 0.961
S4RXJ4_PETMA
ERGIC and golgi 3.
  
 0.961
S4RW97_PETMA
Mitochondrial ribosomal protein L21.
   
 
 0.861
S4RIW9_PETMA
Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
  
 
 0.858
MRM3
Mitochondrial rRNA methyltransferase 3.
   
 
 0.850
S4RTH4_PETMA
Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
    
 
 0.848
S4RMZ2_PETMA
Si:zfos-1192g2.3.
   
 
 0.846
S4RBS3_PETMA
Mitochondrial ribosomal protein L15.
    
 
 0.840
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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