Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R746_PETMAUncharacterized protein. (1266 aa)    
Predicted Functional Partners:
S4RV91_PETMA
AT rich interactive domain 2 (ARID, RFX-like).
   
 0.999
S4R8I1_PETMA
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.
   
 0.998
SMARCB1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
   
 0.997
S4RN62_PETMA
Actin-like 6A; Belongs to the actin family.
   
 0.996
S4RH82_PETMA
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.
   
 0.989
S4RJF0_PETMA
AT rich interactive domain 1B (SWI1-like).
   
 0.987
S4RJQ4_PETMA
Bromo domain-containing protein.
   
 0.985
S4RLQ6_PETMA
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2.
   
 0.984
S4RRJ5_PETMA
SANT domain-containing protein.
   
 0.977
SMARCA2
Uncharacterized protein.
   
0.975
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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