STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R754_PETMAWD_REPEATS_REGION domain-containing protein. (333 aa)    
Predicted Functional Partners:
S4RM18_PETMA
Uncharacterized protein.
 
      0.900
S4R848_PETMA
Uncharacterized protein.
   
 0.816
S4RMK2_PETMA
Uncharacterized protein.
    
 0.769
S4RVX9_PETMA
WD repeat domain 90.
    
 0.769
S4RHF3_PETMA
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.748
RANBP2
RAN binding protein 2.
   
 0.748
S4R685_PETMA
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.745
BUB1
BUB1 mitotic checkpoint serine/threonine kinase.
   
 0.745
S4RDR8_PETMA
TAFH domain-containing protein.
    
 0.743
S4R788_PETMA
Testis expressed 10.
   
 0.739
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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