S4R755_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R755_PETMA

Uncharacterized protein. (589 aa)

Predicted Functional Partners:

SORT1

0.856

SORT1-2

0.856

S4RSK1_PETMA

0.777

S4RRI4_PETMA

0.751

S4R5D1_PETMA

0.727

S4S027_PETMA

0.667

S4RLN6_PETMA

0.626

S4RVX1_PETMA

0.613

S4R5C4_PETMA

0.583

S4RWV1_PETMA

0.563

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S4R5C4_PETMA	S4R755_PETMA	ENSPMAP00000000404	ENSPMAP00000001035	BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase).	Uncharacterized protein.	0.583
S4R5D1_PETMA	S4R755_PETMA	ENSPMAP00000000411	ENSPMAP00000001035	Cathepsin Bb; Belongs to the peptidase C1 family.	Uncharacterized protein.	0.727
S4R5D1_PETMA	S4RSK1_PETMA	ENSPMAP00000000411	ENSPMAP00000008190	Cathepsin Bb; Belongs to the peptidase C1 family.	Uncharacterized protein.	0.705
S4R5D1_PETMA	S4RWV1_PETMA	ENSPMAP00000000411	ENSPMAP00000009691	Cathepsin Bb; Belongs to the peptidase C1 family.	Uncharacterized protein.	0.766
S4R755_PETMA	S4R5C4_PETMA	ENSPMAP00000001035	ENSPMAP00000000404	Uncharacterized protein.	BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase).	0.583
S4R755_PETMA	S4R5D1_PETMA	ENSPMAP00000001035	ENSPMAP00000000411	Uncharacterized protein.	Cathepsin Bb; Belongs to the peptidase C1 family.	0.727
S4R755_PETMA	S4RLN6_PETMA	ENSPMAP00000001035	ENSPMAP00000006122	Uncharacterized protein.	Transmembrane protein 106Bb.	0.626
S4R755_PETMA	S4RRI4_PETMA	ENSPMAP00000001035	ENSPMAP00000007820	Uncharacterized protein.	Glutaredoxin 3.	0.751
S4R755_PETMA	S4RSK1_PETMA	ENSPMAP00000001035	ENSPMAP00000008190	Uncharacterized protein.	Uncharacterized protein.	0.777
S4R755_PETMA	S4RVX1_PETMA	ENSPMAP00000001035	ENSPMAP00000009361	Uncharacterized protein.	Zgc:100846.	0.613
S4R755_PETMA	S4RWV1_PETMA	ENSPMAP00000001035	ENSPMAP00000009691	Uncharacterized protein.	Uncharacterized protein.	0.563
S4R755_PETMA	S4S027_PETMA	ENSPMAP00000001035	ENSPMAP00000010818	Uncharacterized protein.	DnaJ (Hsp40) homolog, subfamily C, member 10.	0.667
S4R755_PETMA	SORT1	ENSPMAP00000001035	ENSPMAP00000002301	Uncharacterized protein.	Sortilin.	0.856
S4R755_PETMA	SORT1-2	ENSPMAP00000001035	ENSPMAP00000003344	Uncharacterized protein.	Sortilin.	0.856
S4RLN6_PETMA	S4R755_PETMA	ENSPMAP00000006122	ENSPMAP00000001035	Transmembrane protein 106Bb.	Uncharacterized protein.	0.626
S4RLN6_PETMA	S4RSK1_PETMA	ENSPMAP00000006122	ENSPMAP00000008190	Transmembrane protein 106Bb.	Uncharacterized protein.	0.706
S4RLN6_PETMA	S4RVX1_PETMA	ENSPMAP00000006122	ENSPMAP00000009361	Transmembrane protein 106Bb.	Zgc:100846.	0.679
S4RLN6_PETMA	SORT1	ENSPMAP00000006122	ENSPMAP00000002301	Transmembrane protein 106Bb.	Sortilin.	0.459
S4RLN6_PETMA	SORT1-2	ENSPMAP00000006122	ENSPMAP00000003344	Transmembrane protein 106Bb.	Sortilin.	0.459
S4RRI4_PETMA	S4R755_PETMA	ENSPMAP00000007820	ENSPMAP00000001035	Glutaredoxin 3.	Uncharacterized protein.	0.751