STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R776_PETMABystin-like. (349 aa)    
Predicted Functional Partners:
S4R4K3_PETMA
Uncharacterized protein.
   
 
 0.999
S4R5N2_PETMA
WD repeat domain 46.
   
 
 0.999
S4R828_PETMA
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
   
 
 0.999
S4R928_PETMA
UTP15 small subunit processome component.
   
 
 0.999
S4RC43_PETMA
UTP4 small subunit processome component.
   
 
 0.999
S4RD17_PETMA
Nucleolar protein 10.
   
 
 0.999
S4RDW7_PETMA
Uncharacterized protein.
   
 
 0.999
S4REJ8_PETMA
NOP14 nucleolar protein homolog (yeast).
   
 
 0.999
NAT10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.999
TSR1
TSR1 ribosome maturation factor.
   
 0.999
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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