Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
S4R780_PETMAOTU domain-containing protein. (915 aa)    
Predicted Functional Partners:
S4RJY1_PETMA
AAA domain-containing protein; Belongs to the AAA ATPase family.
    
 
 0.957
S4RHJ9_PETMA
NSFL1 (p97) cofactor (p47).
    
 
 0.920
S4RMF7_PETMA
UBX domain protein 7.
   
 
 0.914
S4RQ99_PETMA
NPL4 homolog, ubiquitin recognition factor.
    
 
 0.893
S4RNL4_PETMA
WWE domain-containing protein.
   
 
 0.876
S4R8Y2_PETMA
Uncharacterized protein.
    
 
 0.814
S4RUF6_PETMA
AAA domain-containing protein; Belongs to the AAA ATPase family.
    
 
 0.814
S4RBC5_PETMA
TNFAIP3 interacting protein 1.
    
 0.773
UBB
Ubiquitin B.
    
 0.756
S4R6G0_PETMA
SprT-like domain-containing protein.
    
 
 0.727
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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