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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R787_PETMAFibrillar collagen NC1 domain-containing protein. (1275 aa)    
Predicted Functional Partners:
S4RK02_PETMA
Uncharacterized protein.
    
 0.834
S4RLW1_PETMA
Ig-like domain-containing protein.
    
 0.834
S4RIH0_PETMA
Collagen IV NC1 domain-containing protein.
 
      0.789
S4REP7_PETMA
LAM_G_DOMAIN domain-containing protein.
 
  
  0.595
S4RG93_PETMA
WD_REPEATS_REGION domain-containing protein.
    
 0.568
S4RXY6_PETMA
TROVE domain-containing protein.
    
 0.568
S4R967_PETMA
SET domain bifurcated histone lysine methyltransferase 1b.
    
  0.515
ENSPMAP00000006806
annotation not available
  
     0.484
S4RLG3_PETMA
Uncharacterized protein.
 
      0.470
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
    
  0.467
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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