Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R787_PETMAFibrillar collagen NC1 domain-containing protein. (1275 aa)    
Predicted Functional Partners:
S4RIH0_PETMA
Collagen IV NC1 domain-containing protein.
 
      0.789
S4RSM3_PETMA
Integrin beta; Belongs to the integrin beta chain family.
    
 0.763
S4RDQ7_PETMA
VWFA domain-containing protein.
    
 0.753
S4RF57_PETMA
VWFA domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.753
S4RSW0_PETMA
VWFA domain-containing protein.
    
 0.753
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.752
ITGB1-2
Integrin beta; Belongs to the integrin beta chain family.
    
 0.752
S4RS57_PETMA
Integrin beta.
    
 0.752
S4RX64_PETMA
Integrin beta; Belongs to the integrin beta chain family.
    
 0.748
ITGA6
Integrin subunit alpha 6; Belongs to the integrin alpha chain family.
    
 0.741
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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