Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R790_PETMATranscription elongation regulator 1a (CA150). (597 aa)    
Predicted Functional Partners:
S4RS76_PETMA
RNA binding motif protein 22.
   
 0.953
S4RLN9_PETMA
Uncharacterized protein.
   
 0.946
S4RU57_PETMA
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.941
S4RTY8_PETMA
CWC15 spliceosome associated protein homolog.
   
 0.912
S4RR24_PETMA
Uncharacterized protein.
 
      0.900
S4RTX3_PETMA
Uncharacterized protein.
   
 0.896
S4RKR2_PETMA
CDC5 cell division cycle 5-like (S. pombe).
   
  0.889
S4RB87_PETMA
Crooked neck pre-mRNA splicing factor 1.
   
  0.882
S4R476_PETMA
Coiled-coil domain containing 12.
    
  0.881
S4RS47_PETMA
Pleiotropic regulator 1.
    
  0.881
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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