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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R790_PETMATranscription elongation regulator 1a (CA150). (597 aa)    
Predicted Functional Partners:
S4RLN9_PETMA
Uncharacterized protein.
   
 0.976
S4RU57_PETMA
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.969
S4RKR2_PETMA
CDC5 cell division cycle 5-like (S. pombe).
   
  0.951
S4RS76_PETMA
RNA binding motif protein 22.
   
 0.951
S4RTX3_PETMA
Uncharacterized protein.
   
 0.950
S4RTY8_PETMA
CWC15 spliceosome associated protein homolog.
   
  0.947
S4R476_PETMA
Coiled-coil domain containing 12.
    
  0.942
S4RB87_PETMA
Crooked neck pre-mRNA splicing factor 1.
    
  0.942
S4RS47_PETMA
Pleiotropic regulator 1.
    
  0.942
S4R8C8_PETMA
Splicing factor 3b, subunit 1.
   
 
 0.940
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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