Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R792_PETMASynaptotagmin IIa. (233 aa)    
Predicted Functional Partners:
S4RTF1_PETMA
V-SNARE coiled-coil homology domain-containing protein.
    
 0.774
S4RWQ4_PETMA
RAB3C, member RAS oncogene family.
   
 0.709
SNAP25-2
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.635
SNAP25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.577
S4RXA9_PETMA
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.577
S4RR09_PETMA
Uncharacterized protein.
     
 0.574
S4R5Z2_PETMA
Syntaxin 1A (brain).
    
 0.572
S4RTL6_PETMA
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
    
 0.566
STON2
Stonin 2; Belongs to the adaptor complexes medium subunit family.
    
 0.549
STON2-2
Stonin-2; Adapter protein involved in endocytic machinery. Involved in the synaptic vesicle recycling. May facilitate clathrin-coated vesicle uncoating; Belongs to the Stoned B family.
    
 0.549
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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