STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R7A6_PETMAProbable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis. (247 aa)    
Predicted Functional Partners:
S4R9I4_PETMA
TSR2 ribosome maturation factor.
   
  
 0.824
S4RXY4_PETMA
Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.
 
 
  
 0.812
TSR1
TSR1 ribosome maturation factor.
   
  
 0.774
S4R9Q1_PETMA
TP53 regulating kinase.
 
      0.702
S4R7X5_PETMA
5-oxoprolinase, ATP-hydrolysing.
 
      0.610
S4RGF7_PETMA
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
 
      0.581
DUS2
Dihydrouridine synthase 2.
   
  
 0.552
S4RQR4_PETMA
LTV1 ribosome biogenesis factor.
   
  
 0.507
S4R5V4_PETMA
Family with sequence similarity 173 member A.
   
  
 0.506
S4RD17_PETMA
Nucleolar protein 10.
   
  
 0.504
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.