S4R7C6_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R7C6_PETMA

Si:ch211-245j22.3. (185 aa)

Predicted Functional Partners:

S4RZW7_PETMA

0.717

S4RUK4_PETMA

0.666

CALML3

0.606

CALM3

0.606

S4RL94_PETMA

0.606

S4RIE4_PETMA

0.602

S4RR80_PETMA

0.602

S4R8S8_PETMA

0.585

S4RZC1_PETMA

0.582

S4RTR8_PETMA

0.577

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CALM3	CALML3	ENSPMAP00000003636	ENSPMAP00000003578	Calmodulin 3; Belongs to the calmodulin family.	Uncharacterized protein; Belongs to the calmodulin family.	0.900
CALM3	S4R7C6_PETMA	ENSPMAP00000003636	ENSPMAP00000001106	Calmodulin 3; Belongs to the calmodulin family.	Si:ch211-245j22.3.	0.606
CALM3	S4RL94_PETMA	ENSPMAP00000003636	ENSPMAP00000005980	Calmodulin 3; Belongs to the calmodulin family.	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.900
CALML3	CALM3	ENSPMAP00000003578	ENSPMAP00000003636	Uncharacterized protein; Belongs to the calmodulin family.	Calmodulin 3; Belongs to the calmodulin family.	0.900
CALML3	S4R7C6_PETMA	ENSPMAP00000003578	ENSPMAP00000001106	Uncharacterized protein; Belongs to the calmodulin family.	Si:ch211-245j22.3.	0.606
CALML3	S4RL94_PETMA	ENSPMAP00000003578	ENSPMAP00000005980	Uncharacterized protein; Belongs to the calmodulin family.	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.900
S4R7C6_PETMA	CALM3	ENSPMAP00000001106	ENSPMAP00000003636	Si:ch211-245j22.3.	Calmodulin 3; Belongs to the calmodulin family.	0.606
S4R7C6_PETMA	CALML3	ENSPMAP00000001106	ENSPMAP00000003578	Si:ch211-245j22.3.	Uncharacterized protein; Belongs to the calmodulin family.	0.606
S4R7C6_PETMA	S4R8S8_PETMA	ENSPMAP00000001106	ENSPMAP00000001609	Si:ch211-245j22.3.	Zgc:171971.	0.585
S4R7C6_PETMA	S4RIE4_PETMA	ENSPMAP00000001106	ENSPMAP00000004976	Si:ch211-245j22.3.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.602
S4R7C6_PETMA	S4RL94_PETMA	ENSPMAP00000001106	ENSPMAP00000005980	Si:ch211-245j22.3.	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.606
S4R7C6_PETMA	S4RR80_PETMA	ENSPMAP00000001106	ENSPMAP00000007716	Si:ch211-245j22.3.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.602
S4R7C6_PETMA	S4RTR8_PETMA	ENSPMAP00000001106	ENSPMAP00000008608	Si:ch211-245j22.3.	Ankyrin repeat domain 33Bb.	0.577
S4R7C6_PETMA	S4RUK4_PETMA	ENSPMAP00000001106	ENSPMAP00000008894	Si:ch211-245j22.3.	Solute carrier family 32 member 1.	0.666
S4R7C6_PETMA	S4RZC1_PETMA	ENSPMAP00000001106	ENSPMAP00000010562	Si:ch211-245j22.3.	RIC8 guanine nucleotide exchange factor B.	0.582
S4R7C6_PETMA	S4RZW7_PETMA	ENSPMAP00000001106	ENSPMAP00000010758	Si:ch211-245j22.3.	Potassium voltage-gated channel, subfamily F, member 1b; Belongs to the potassium channel family.	0.717
S4R8S8_PETMA	S4R7C6_PETMA	ENSPMAP00000001609	ENSPMAP00000001106	Zgc:171971.	Si:ch211-245j22.3.	0.585
S4R8S8_PETMA	S4RUK4_PETMA	ENSPMAP00000001609	ENSPMAP00000008894	Zgc:171971.	Solute carrier family 32 member 1.	0.593
S4RIE4_PETMA	S4R7C6_PETMA	ENSPMAP00000004976	ENSPMAP00000001106	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Si:ch211-245j22.3.	0.602
S4RL94_PETMA	CALM3	ENSPMAP00000005980	ENSPMAP00000003636	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	Calmodulin 3; Belongs to the calmodulin family.	0.900