Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
S4R7D4_PETMANK2 homeobox 1. (229 aa)    
Predicted Functional Partners:
S4RJD3_PETMA
E1A binding protein p300 a.
    
 
 0.828
S4RKK9_PETMA
Forkhead box A2.
   
 
 0.758
S4RUC1_PETMA
Forkhead box G1a.
   
 0.713
S4RJ05_PETMA
Fork-head domain-containing protein.
   
 
 0.695
S4R814_PETMA
Uncharacterized protein.
      
 0.647
S4RGR4_PETMA
Uncharacterized protein.
    
 0.619
S4R9Z1_PETMA
Pax2_C domain-containing protein.
    
 
 0.600
S4RD33_PETMA
Secretagogin, EF-hand calcium binding protein.
    
 
 0.600
TBR1
T-box brain transcription factor 1.
    
 0.600
S4RX66_PETMA
LIM homeobox 1b.
    
 0.600
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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