Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R7D7_PETMAFCP1 homology domain-containing protein. (374 aa)    
Predicted Functional Partners:
S4RIB3_PETMA
Serine/threonine kinase 35.
   
   0.819
S4RMV4_PETMA
Lipin_mid domain-containing protein.
    
 0.784
S4RK02_PETMA
Uncharacterized protein.
    
 
 0.668
S4RLW1_PETMA
Ig-like domain-containing protein.
    
 
 0.668
S4RXD5_PETMA
Importin subunit alpha; Belongs to the importin alpha family.
   
 
 0.581
S4RLK7_PETMA
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.578
GTF2F2
General transcription factor IIF subunit 2.
    
 0.536
S4RJW7_PETMA
RPOL4c domain-containing protein.
    
 0.531
S4RV21_PETMA
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
  0.512
TIMM21
Translocase of inner mitochondrial membrane 21.
    
 0.503
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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