Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R7F7_PETMAUncharacterized protein. (1032 aa)    
Predicted Functional Partners:
S4RQV7_PETMA
TMEM131_like domain-containing protein.
 
     0.930
S4RRR6_PETMA
DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.
    
   0.738
S4RFY3_PETMA
CHAT domain-containing protein.
      
 0.656
S4REF8_PETMA
Rap-GAP domain-containing protein.
   
  
 0.592
S4RM54_PETMA
CCR4-NOT transcription complex, subunit 6-like.
    
   0.569
S4RRQ4_PETMA
Uncharacterized protein.
   
  
 0.511
S4RDA2_PETMA
NHL repeat containing 2.
      
 0.497
S4RHG0_PETMA
VPS18 core subunit of CORVET and HOPS complexes.
      
 0.489
S4RA24_PETMA
Tetratricopeptide repeat domain 13.
      
 0.461
BSDC1
BSD domain containing 1.
      
 0.459
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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