S4R7G0_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R7G0_PETMA

Uncharacterized protein. (666 aa)

Predicted Functional Partners:

S4R8M8_PETMA

0.939

S4RSI8_PETMA

0.939

S4RCT9_PETMA

0.906

S4RTZ2_PETMA

0.906

S4RNX1_PETMA

0.901

S4R6W7_PETMA

0.900

S4S092_PETMA

0.900

S4RST1_PETMA

0.899

S4RZW9_PETMA

0.890

S4R834_PETMA

0.670

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S4R6W7_PETMA	S4R7G0_PETMA	ENSPMAP00000000947	ENSPMAP00000001140	C1q domain-containing protein.	Uncharacterized protein.	0.900
S4R6W7_PETMA	S4RCT9_PETMA	ENSPMAP00000000947	ENSPMAP00000003021	C1q domain-containing protein.	Calreticulin.	0.908
S4R6W7_PETMA	S4RNX1_PETMA	ENSPMAP00000000947	ENSPMAP00000006907	C1q domain-containing protein.	Low density lipoprotein receptor-related protein 1Ab.	0.900
S4R6W7_PETMA	S4RTZ2_PETMA	ENSPMAP00000000947	ENSPMAP00000008682	C1q domain-containing protein.	Calreticulin.	0.908
S4R6W7_PETMA	S4S092_PETMA	ENSPMAP00000000947	ENSPMAP00000010883	C1q domain-containing protein.	C1q domain-containing protein.	0.900
S4R7G0_PETMA	S4R6W7_PETMA	ENSPMAP00000001140	ENSPMAP00000000947	Uncharacterized protein.	C1q domain-containing protein.	0.900
S4R7G0_PETMA	S4R834_PETMA	ENSPMAP00000001140	ENSPMAP00000001365	Uncharacterized protein.	DEP domain-containing protein.	0.670
S4R7G0_PETMA	S4R8M8_PETMA	ENSPMAP00000001140	ENSPMAP00000001559	Uncharacterized protein.	GULP PTB domain containing engulfment adaptor 1a.	0.939
S4R7G0_PETMA	S4RCT9_PETMA	ENSPMAP00000001140	ENSPMAP00000003021	Uncharacterized protein.	Calreticulin.	0.906
S4R7G0_PETMA	S4RNX1_PETMA	ENSPMAP00000001140	ENSPMAP00000006907	Uncharacterized protein.	Low density lipoprotein receptor-related protein 1Ab.	0.901
S4R7G0_PETMA	S4RSI8_PETMA	ENSPMAP00000001140	ENSPMAP00000008177	Uncharacterized protein.	Uncharacterized protein.	0.939
S4R7G0_PETMA	S4RST1_PETMA	ENSPMAP00000001140	ENSPMAP00000008271	Uncharacterized protein.	Uncharacterized protein.	0.899
S4R7G0_PETMA	S4RTZ2_PETMA	ENSPMAP00000001140	ENSPMAP00000008682	Uncharacterized protein.	Calreticulin.	0.906
S4R7G0_PETMA	S4RZW9_PETMA	ENSPMAP00000001140	ENSPMAP00000010760	Uncharacterized protein.	Uncharacterized protein.	0.890
S4R7G0_PETMA	S4S092_PETMA	ENSPMAP00000001140	ENSPMAP00000010883	Uncharacterized protein.	C1q domain-containing protein.	0.900
S4R834_PETMA	S4R7G0_PETMA	ENSPMAP00000001365	ENSPMAP00000001140	DEP domain-containing protein.	Uncharacterized protein.	0.670
S4R834_PETMA	S4RNX1_PETMA	ENSPMAP00000001365	ENSPMAP00000006907	DEP domain-containing protein.	Low density lipoprotein receptor-related protein 1Ab.	0.673
S4R834_PETMA	S4RST1_PETMA	ENSPMAP00000001365	ENSPMAP00000008271	DEP domain-containing protein.	Uncharacterized protein.	0.672
S4R834_PETMA	S4RZW9_PETMA	ENSPMAP00000001365	ENSPMAP00000010760	DEP domain-containing protein.	Uncharacterized protein.	0.673
S4R8M8_PETMA	S4R7G0_PETMA	ENSPMAP00000001559	ENSPMAP00000001140	GULP PTB domain containing engulfment adaptor 1a.	Uncharacterized protein.	0.939