STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R7G4_PETMANucleosome assembly protein 1-like 1; Belongs to the nucleosome assembly protein (NAP) family. (397 aa)    
Predicted Functional Partners:
S4RSN8_PETMA
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 
 0.780
UBE2O
Ubiquitin conjugating enzyme E2 O.
    
 
 0.723
S4RD92_PETMA
SET nuclear proto-oncogene b; Belongs to the nucleosome assembly protein (NAP) family.
   
 
 0.646
S4RKU8_PETMA
BR serine/threonine kinase 2b.
    
 
 0.626
S4RNN0_PETMA
Uncharacterized protein.
    
 
 0.626
S4RTE4_PETMA
H2A histone family, member Y2; Belongs to the histone H2A family.
    
 
 0.586
EIF3E
Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
   
 
 0.567
S4RJK2_PETMA
Polymerase (DNA-directed), delta interacting protein 3.
    
 
 0.560
S4R871_PETMA
Uncharacterized protein.
   
 
 0.556
S4RAZ5_PETMA
Histone H2A; Belongs to the histone H2A family.
    
 
 0.554
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.